PhotoSynLab

Publications

PR: Peer Reviewed, IR: Invited Review, B: Book, BC: Book Chapter, P: Proceeding

Ramisetty SK, Langlette P, Lale R, Dias RdS. (2017) In vitro studies of DNA condensation by bridging protein in a crowding environment. International Journal of Biological Macromolecules. [PR]

Vogel AIM, Lale R, Hohmann-Marriott MF. (2017) Streamlining recombination-mediated genetic engineering by validating three neutral integration sites in Synechococcus sp. PCC 7002. Journal of Biological Engineering. [PR]

Røkke G, Melø TB & Hohmann-Marriott MF (2017) The plastoquinone pool of Nannochloropsis oceanica is not completely reduced during bright light pulses (accepted for publication)  Plos ONE – Link to raw data: 10.1371journal.pone.0175184_[PR]

Lewin A, Lale R, Wentzel A. (2017) Expression Platforms for Functional Metagenomics – Emerging technology options beyond Escherichia coli. Functional Metagenomics: Tools and Applications. Springer. [BC]

Beal J, Haddock-Angelli T, Gershater M, de Mora K, Lizarazo M, Hollenhorst J, et al. (2016) Reproducibility of fluorescent expression from engineered biological constructs in E. coli. PLoS ONE [PR]

Arnfinnsdottir, NB., Bjørkøy, A., Lale, R., Sletmoen, M. (2016) Heterogeneity in GFP expression in isogenic populations of P. putida KT2440 investigated using flow cytometry and bacterial microarrays. RSC Advances [PR]

Moghadam MM, Albersmeier A,Winkler A, Cimmino L, Rise K, Hohmann-Marriott FM, Kalinowski J, Rückert C, Wentzel A, Lale, R. (2016) Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity. BMC Genomics [PR]

Lamb J, Forfang K, Hohmann-Marriott MF (2015) A practical solution for 77 K fluorescence measurements based on LED excitation and CCD array detector, PLoS ONE e0132258 [PR]

Bjerga, GE, Lale, R., Williamson, A. (2015) Engineering low-temperature expression systems for heterologous expression of cold-adapted enzymes. Bioengineered [PR]

Arnfinnsdottir, NB., Ottesen, V., Lale, R., Sletmoen, M. (2015) The design of simple bacterial microarrays. Development towards immobilizing single living bacteria on predefined micro-sized spots on patterned surfaces. PLoS ONE [PR]

J.J. Lamb, R.E. Hill, J.J. Eaton-Rye & M.F. Hohmann-Marriott (2014). Functional role of PilA1 in iron acquisition in the cyanobacterium Synechocystis sp. PCC 6803. PLoS ONE  e105761 [PR]

Petrov, V., Balasubramaniam, S., Lale, R., Moltchanov, D., Lio’, P., Koucheryavy, Y. (2014) Forward and Reverse Coding for Chromosome Transfer in Bacterial Nanonetworks. Nano Communication Networks. [PR]

Strand, TA., Lale, R., Degnes, KF., Lando, M. and Valla, S. (2014) A new and improved host-independent plasmid system for RK2-based conjugal transfer. PLoS ONE. [PR]

DNA Cloning and Assembly Methods. (2014) Methods in Molecular Biology, edited by Rahmi Lale and Svein Valla. Volume 1116, XI, 303 p. Springer Protocols, Humana Press. [B]

Røkke, G., Korvald, E., Pahr, J., Øyås, O., and Lale, R. (2014) BioBrick assembly standards and techniques and associated software tools. DNA Cloning and Assembly Methods. Methods in Molecular Biology, edited by Lale, R. and Valla, S. Volume 1116, 2014, pp 1-24 Springer Protocols, Humana Press. [BC]

M.F. Hohmann-Marriott (Editor) (2014) The Structural Basis of Biological Energy Generation, in: Advances in Photosynthesis and Respiration, Springer, Dordrecht, The Netherlands, ISBN 978-94-017-8741-3 [B]

A. Mühlroth, K. Lee, G Røkke, P. Winge, Y. Olsen, M.F. Hohmann-Marriott, O. Vadstein & A.M. Bones (2013) Pathways of lipid metabolism in marine algae, co-expression network, bottlenecks and candidate genes for enhanced production of EPA and DHA in species of Chromista. Marine Drugs 11: 4662-4697 [PR, IR]

J.J. Lamb, J. J. Eaton-Rye & M.F. Hohmann-Marriott (2013) A cost effective solution to reliable determination of cell numbers of microorganisms in liquid culture. Current Microbiology, 67: 123-129 [PR]

Zwick, F., Lale, R. and Valla, S. (2013) Regulation of the expression level of transcription factor XylS reveals new functional insight into its induction mechanism at the Pm promoter. BMC Microbiol. 13: 262. [PR]

Zwick, F., Lale, R. and Valla, S. (2013) Combinatorial engineering for heterologous gene expression. Bioengineered. [PR]

Balzer, S., Kucharova, V., Megerle, J., Lale, R., Brautaset, T., Valla, S. (2013) A comparative analysis of the properties of regulated promoter systems commonly used for recombinant gene expression in Escherichia coli. Microbial Cell Factories, 12:26. [PR]

J. Lamb, J. J. Eaton-Rye, and M.F. Hohmann-Marriott (2012) A LED-based fluorometer for chlorophyll quantification in the laboratory and in the field, Photosynthesis Research. 114: 59-68. [PR]

H. Moreau, B. Verhelst, A. Couloux, E. Derelle, S. Rombauts, Nigel. Grimsley, M. Van Bel, J. Poulain, M. Katinka, M.F. Hohmann-Marriott, G. Piganeau, P. Rouzé, C. Da Silva, P. Wincker, Y. Van de Peer, and K. Vandepoele (2012) Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage, Genome Biology 2012, 13:R74 [PR]

M.F. Hohmann-Marriott and R.E. Blankenship (2012) The Photosynthetic World, In: Advances in Photosynthesis and Respiration, Series Editor: Govindjee, Editor: J. Eaton-Rye, pp 3-32, Springer, Dordrecht, The Netherlands. [BC]

Zwick, F., Lale, R. and Valla, S. (2012) Strong stimulation of recombinant protein production in Escherichia coli by combining stimulatory expression control elements in the expression cassette. Microbial Cell Factories, 11:133. [PR]

Almaas, E., Bruheim, P., Lale, R. and Valla, S. (2012) Dynamics and robustness of metabolic networks: A systems biology review of Escherichia coli metabolism. Systems Microbiology: Current Topics and Applications. ISBN: 978-1-908230-02-7. [BC]

M.F. Hohmann-Marriott and R.E. Blankenship (2011) The evolution of photosynthesis, Annual Review of Plant Biology, 62: 515-48 [IR, PR]

Aakvik, T., Lale, R., Liles, M. and Valla, S. (2011) Metagenomic libraries for functional screening, Ch 22. Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. Ed. de Bruijn, F.J. [BC]

Lale, R., Brautaset, T.and Valla, S. (2011) Broad-host-range plasmid vectors for gene expression in bacteria. Met. Mol. Biol. 765, Part 3, 327-343. [BC]

Lale, R., Berg, L., Stüttgen, F., Netzer, R., Stafsnes, M., Brautaset, T., Aune, T.E.V. and Valla. S. (2011) Continuous control of the flow in biochemical pathways through 5′-UTR sequence modifications in mRNA expressed from the broad-host-range Pm promoter. Appl. Env. Mircobiol. 77: 2648-2655. [PR]

M.F. Hohmann-Marriott, K. Takizawa, J.J. Eaton-Rye, L. Mets and J. Minagawa (2010) The redox state of the plastoquinone pool directly modulates chlorophyll fluorescence in Chlamydomonas reinhardtii, FEBS-Letters 584: 1021-1026. [PR]

Aune, T. E. V., Bakke, I., Drabløs, F., Lale, R., Brautaset, T. and Valla, S. (2010) Directed evolution of the transcription factor XylS for development of improved expression systems. Microb. Biotechnol. 3:1, 38–47. [PR]

M.F. Hohmann-Marriott, A.A. Sousa, A. A. Azari, S. Glushakova, G. Zhang, J. Zimmerberg and R. D. Leapman (2009) Nanoscale 3D cellular imaging by axial scanning transmission electron tomography, Nature Methods 10: 729-731. [PR]

M.F. Hohmann-Marriott and R.W. Roberson (2009) Exploring photosynthesis by electron tomography, Photosynthesis Research 102: 177-188. [PR, IR]

A.A Sousa, M.F. Hohmann-Marriott, G. Zhang and Leapman R.D. (2009) Monte Carlo electron-trajectory simulations in bright-field and dark-field STEM: Implications for tomography of thick biological sections, Ultramicroscopy 109: 213-221. [PR]

S. Glushakova, J. Mazar, E. Hama, M.F. Hohmann-Marriott, J. Zimmerberg (2009) Inhibitors of cysteine proteases irreversibly inactivate malaria parasites at the end of the erythrocyte cycle, Cellular Microbiology 11:95-105. [PR]

Berg, L., Lale, R., Bakke, I., Burroughs, N. and Valla, S. (2009) The expression of recombinant genes in Escherichia coli can be strongly stimulated at the transcript production level by mutating the DNA-region corresponding to the 5′-untranslated part of mRNA. Microb. Biotechnol. 2(3), 379-389. [PR]

Brautaset, T., Lale, R. and Valla, S. (2009) Positively regulated bacterial expression systems. Microb. Biotechnol. 2 (1), 15-30. [IR]

M.F. Hohmann-Marriott, A.M.L. van de Meene and R.W. Roberson (2008) Electron tomographic techniques: A gateway to photosynthetic structure, In: Advances in Photosynthesis and Respiration, Biophysical Techniques in Photosynthesis II, Series Editor: Govindjee, Editor: J. Matysik and T. J. Aartsma, pp 13-34, Springer, Dordrecht, The Netherlands. [BC]

A.A. Sousa, M.F. Hohmann-Marriott, M.A. Aronova, G.F. Zhang, and R.D. Leapman (2008) Determination of quantitative distributions of heavy-metal stain in biological specimens by annular dark-field STEM, Journal of Structural Biology 162: 14-28. [PR]

M.F. Hohmann-Marriott and R.E. Blankenship (2008) Anoxygenic Type-I Photosystems and Evolution of Photosynthetic Reaction Centers, In: Photosynthetic Protein Complexes– A Structural Approach, Editor: P. Fromme, Wiley-VCH, Weinheim, pp 295-324. [BC]

Bar, N. S. and Lale, R. (2008) Modeling and control of the protein synthesis process in eukaryotic cells. 47th IEEE Proceedings: Conference on Decision and Control (CDC) 179-184. [P]

M.F. Hohmann-Marriott and R.E. Blankenship (2007) Variable fluorescence in green sulfur bacteria, Biochimica et Biophysica Acta, 1767: 106-113. [PR]

M.F. Hohmann-Marriott and R.E. Blankenship (2007) Hypothesis on the biogenesis of chlorosomes in green photosynthetic bacteria, Federation of European Biochemical Societies (FEBS) Letters, 581: 800-803. [PR]

M.F. Hohmann-Marriott, M. Uchida, A.M.L. van de Meene, M. Garret, B. E. Hjelm, S. Kokoori and R.W. Roberson (2006) Application of electron tomography to fungal ultrastructure studies. New Phytologist 172: 208-220. [PR, IR]

W. Swingley, M.F. Hohmann-Marriott, T. Olson and R.E. Blankenship (2005) Effect of iron on growth and ultrastructure of Acaryochloris marina, Applied and Environmental Microbiology 71: 8606-8610. [PR]

M.F. Hohmann-Marriott, R.E. Blankenship and R. W. Roberson (2005) The ultrastructure of Chlorobium tepidum chlorosomes revealed by electron microscopy, Photosynthesis Research 86: 145-154. [PR]

A.M.L. van de Meene, M.F. Hohmann-Marriott, W.F.J. Vermaas and R.W. Roberson (2005) The three-dimensional structure of the cyanobacterium Synechocystis sp. PCC 6803, Archives of Microbiology 185: 259-270. [PR]

M.F. Hohmann-Marriott, W.P. Sharp, R. W. Roberson and R.E. Blankenship (2005) Digital position determination system for electron microscopy, Microscopy Research and Technique 67: 106-111. [PR]