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Category: LabWiki
Conferences 2018
This is a selection of conferences relevant for our lab in 2018: The 8th International Conference on Algal Biomass, Biofuels and Bioproducts June 11 – 13, Seattle, USA The first European Congress on Photosynthesis Research (ePS-1) June 25-28, Uppsala Sweden ePS-Young meeting for PhD students and postdocs June 22-24, Uppsala Sweden 16th International Symposium on Phototropic Prokaryotes (ISPP) August…
Handling sequence files
To merge (concatenate) individual sequence files into one file: cat *.seq > combined.seq To reverse complement the sequences: Save the code below as FileNameOfYourChoice.py from Bio.SeqRecord import SeqRecord def make_rc_record(record): “””Returns a new SeqRecord with the reverse complement sequence.””” return SeqRecord(seq = record.seq.reverse_complement(), \ id = “rc_” + record.id, \ description = “reverse complement”) from Bio import SeqIO # I…
PhD Grand Prix
Anne participated in the PhD Grand Prix of the Faculty of Natural Science and she was awarded the second prize for her presentation on nanowire-mediated iron uptake. During this competition, PhD candidates had to present their research to a braod audience within 5 minutes. They were judged by a jury and by the audience. A video of my performance can…
Group Meeting, Feb 23rd, 2017
time: 13.00. place: VM-221 Brakkablock Steven will give a presentation on magnetobacteria: Transcriptome analysis reveals physiological characteristics required for magnetosome formation in Magnetospirillum gryphiswaldense MSR-1 http://onlinelibrary.wiley.com/doi/10.1111/1758-2229.12395/full
Group Meeting, Feb 16th, 2017
Time: 13:00-14:00 Room: R Botanikk 2 (360.D1-161) Olha gave a presentation … In vivo cloning (Rahmi) The first article reporting in vivo cloning method is: Rapid cloning by homologous recombination in vivo. Bubeck et al 1993. https://doi.org/10.1093/nar/21.15.3601 And a recent extension of the method is: Cloning Should Be Simple: Escherichia coli DH5α-Mediated Assembly of Multiple DNA Fragments with…
Group Meeting, Feb 9th, 2017
Time: 13:00-14.00 Room: Realfag Botanikk 2 (360.D1-161) We will have two presentations: Swapnil will present previous research Olha will give a presentation on secondary metabolites
Journal Club, Jan 26th, 2017
Chana Kranzler, Nivi Kessler, Nir Keren and Yeala Shaked Environ Microbiol 18 (12), 5101-5111. 2016 Aug 30 Enhanced ferrihydrite dissolution by a unicellular, planktonic cyanobacterium: a biological contribution to particulate iron bioavailability DOI: 10.1111/1462-2920.13496 The presentation given during the Journal Club meeting can be found here: Journal Club Jan 2017
Group Meeting, Feb 2nd, 2017
Time: 13.00-14.00 Location: R D4-132 If you came across an interesting paper, please talk about it! Martin give a presentation about “scientific writing” Rahmi will give presentation on “open science” .
Group Meeting, Jan 26th, 2017
Room: R E5-103 Date: Thursday, 26.01.2017 Time: 13:00-13:45 Tatjana and Anne will hold a presentations. For Anne’s presentation see: Chana Kranzler, Nivi Kessler, Nir Keren andYeala Shaked Enhanced ferrihydrite dissolution by a unicellular, planktonic cyanobacterium: a biological contribution to particulate iron bioavailability Environmental Microbiology (2016) 18(12), 5101–5111 doi:10.1111/1462-2920.13496