PhotoSynLab

Category: LabWiki

Conferences 2018

This is a selection of conferences relevant for our lab in 2018:   The 8th International Conference on Algal Biomass, Biofuels and Bioproducts June 11 – 13, Seattle, USA The first European Congress on Photosynthesis Research (ePS-1) June 25-28, Uppsala Sweden. ePS-Young meeting for PhD students and postdocs June 22-24, Uppsala Sweden. 16th International Symposium on Phototropic Prokaryotes (ISPP) August…

Handling sequence files

To merge (concatenate) individual sequence files into one file: cat *.seq > combined.seq To reverse complement the sequences: Save the code below as FileNameOfYourChoice.py from Bio.SeqRecord import SeqRecord def make_rc_record(record): “””Returns a new SeqRecord with the reverse complement sequence.””” return SeqRecord(seq = record.seq.reverse_complement(), \ id = “rc_” + record.id, \ description = “reverse complement”) from Bio import SeqIO # I…

PhD Grand Prix

Anne participated in the PhD Grand Prix of the Faculty of Natural Science and she was awarded the second prize for her presentation on nanowire-mediated iron uptake. During this competition, PhD candidates had to present their research to a braod audience within 5 minutes. They were judged by a jury and by the audience. A video of my performance can…

Group Meeting, Feb 16th, 2017

Time: 13:00-14:00 Room: R Botanikk 2 (360.D1-161)   Olha gave a presentation …   In vivo cloning (Rahmi) The first article reporting in vivo cloning method is: Rapid cloning by homologous recombination in vivo. Bubeck et al 1993. https://doi.org/10.1093/nar/21.15.3601 And a recent extension of the method is: Cloning Should Be Simple: Escherichia coli DH5α-Mediated Assembly of Multiple DNA Fragments with…

Journal Club, Jan 26th, 2017

Chana Kranzler, Nivi Kessler, Nir Keren and Yeala Shaked Environ Microbiol 18 (12), 5101-5111. 2016 Aug 30 Enhanced ferrihydrite dissolution by a unicellular, planktonic cyanobacterium: a biological contribution to particulate iron bioavailability DOI: 10.1111/1462-2920.13496 The presentation given during the Journal Club meeting can be found here: Journal Club Jan 2017

Group Meeting, Jan 26th, 2017

Room: R E5-103 Date: Thursday, 26.01.2017 Time: 13:00-13:45 Tatjana and Anne will hold a presentations. For Anne’s presentation see: Chana Kranzler, Nivi Kessler, Nir Keren andYeala Shaked Enhanced ferrihydrite dissolution by a unicellular, planktonic cyanobacterium: a biological contribution to particulate iron bioavailability Environmental Microbiology (2016) 18(12), 5101–5111 doi:10.1111/1462-2920.13496